Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga01g01569.F3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2806
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.29
Found at i:783 original size:69 final size:69
Alignment explanation
Indices: 604--888 Score: 239
Period size: 69 Copynumber: 4.1 Consensus size: 69
594 ATGAACAAGG
* * ** * * * **
604 AGGTGATATTGAGCACAAGGGTCGGGAAGAATCACA-TGTTGAAACCGGAGGAAAGACCAATGGT
1 AGGTGATAATGAGCAAAAGGGTAAGGAAGAATCGCAGT-TTGAAGCCGGAGGAAAGGCGGATGGT
*
668 GGAGA
65 GGAAA
* * * * * *
673 AGGTGATAATGTGCAAAAGGCTAAGCAAGAATCACATTTTGATGCCGGAGGAAAGGCGGATGGTG
1 AGGTGATAATGAGCAAAAGGGTAAGGAAGAATCGCAGTTTGAAGCCGGAGGAAAGGCGGATGGTG
738 GAAA
66 GAAA
* * * * ** * * *** *
742 AGGTGATAATGAGCACAAGGGTAAGGACGAATTGCGGTTTGAAGCCGCTGGAAAAGTGGACAATA
1 AGGTGATAATGAGCAAAAGGGTAAGGAAGAATCGCAGTTTGAAGCCGGAGGAAAGGCGGATGGTG
*
807 CAAA
66 GAAA
* * * * *
811 AGGTGATAACGAGTAAAAGGGTAAGGAAGAATCGCAGTTTGAAGCCAGAGGACAGGCAGATGGTG
1 AGGTGATAATGAGCAAAAGGGTAAGGAAGAATCGCAGTTTGAAGCCGGAGGAAAGGCGGATGGTG
876 GAAA
66 GAAA
*
880 AGGCGATAA
1 AGGTGATAA
889 GGAGGGTCAG
Statistics
Matches: 164, Mismatches: 51, Indels: 2
0.76 0.24 0.01
Matches are distributed among these distances:
69 163 0.99
70 1 0.01
ACGTcount: A:0.38, C:0.12, G:0.34, T:0.16
Consensus pattern (69 bp):
AGGTGATAATGAGCAAAAGGGTAAGGAAGAATCGCAGTTTGAAGCCGGAGGAAAGGCGGATGGTG
GAAA
Done.