Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00983.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2094
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28


Found at i:100 original size:26 final size:26

Alignment explanation


    Indices: 71--123  Score: 63
    Period size: 26  Copynumber: 2.0  Consensus size: 26

         61 TCTGCTGCAC

                 *            *        
         71 TCTCATTTTCA-ACTCTTTTCTTCTCT
          1 TCTCAGTTTCACACT-TTCTCTTCTCT

                *                     
         97 TCTCCGTTTCACACTTTCTCTTCTCT
          1 TCTCAGTTTCACACTTTCTCTTCTCT

             
        123 T
          1 T

        124 TCCTATAAAA


Statistics
Matches: 23,  Mismatches: 3, Indels: 2
        0.82            0.11        0.07

Matches are distributed among these distances:
  26   20  0.87
  27    3  0.13

ACGTcount: A:0.09, C:0.34, G:0.02, T:0.55


Consensus pattern (26 bp):   
TCTCAGTTTCACACTTTCTCTTCTCT
Done.