Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00987.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 405

Length: 675
ACGTcount: A:0.32, C:0.22, G:0.24, T:0.23


Found at i:107 original size:15 final size:15

Alignment explanation


    Indices: 84--122  Score: 60
    Period size: 15  Copynumber: 2.6  Consensus size: 15

         74 GGCGCCGAAA

                           
         84 GCCGAGAAGAAGCCC
          1 GCCGAGAAGAAGCCC

              *           *
         99 GCTGAGAAGAAGCCT
          1 GCCGAGAAGAAGCCC

                     
        114 GCCGAGAAG
          1 GCCGAGAAG

        123 CCAACGGAGG


Statistics
Matches: 21,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  15   21  1.00

ACGTcount: A:0.33, C:0.26, G:0.36, T:0.05


Consensus pattern (15 bp):   
GCCGAGAAGAAGCCC
Done.