Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00994.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 699

Length: 1165
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30


Found at i:977 original size:55 final size:55

Alignment explanation


    Indices: 893--1006  Score: 210
    Period size: 55  Copynumber: 2.1  Consensus size: 55

        883 AAGGGTCTTT

                                                *                  
        893 CCTTAAATTCATTGTTGGAAAGAATGGAACACCTCTGCAATATTTACCACAGTGC
          1 CCTTAAATTCATTGTTGGAAAGAATGGAACACCTCTCCAATATTTACCACAGTGC

                                *                                  
        948 CCTTAAATTCATTGTTGGAAGGAATGGAACACCTCTCCAATATTTACCACAGTGC
          1 CCTTAAATTCATTGTTGGAAAGAATGGAACACCTCTCCAATATTTACCACAGTGC

                
       1003 CCTT
          1 CCTT

       1007 CAAGTTCCTC


Statistics
Matches: 57,  Mismatches: 2, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  55   57  1.00

ACGTcount: A:0.31, C:0.24, G:0.16, T:0.30


Consensus pattern (55 bp):   
CCTTAAATTCATTGTTGGAAAGAATGGAACACCTCTCCAATATTTACCACAGTGC
Done.