Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01017.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4434
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.32


Found at i:2246 original size:21 final size:21

Alignment explanation


    Indices: 2220--2265  Score: 92
    Period size: 21  Copynumber: 2.2  Consensus size: 21

       2210 TTGGGCCCAA

                                 
       2220 CTCTGCTAGTGCCTCGCGAAT
          1 CTCTGCTAGTGCCTCGCGAAT

                                 
       2241 CTCTGCTAGTGCCTCGCGAAT
          1 CTCTGCTAGTGCCTCGCGAAT

                
       2262 CTCT
          1 CTCT

       2266 TCTATTGTAT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   25  1.00

ACGTcount: A:0.13, C:0.35, G:0.22, T:0.30


Consensus pattern (21 bp):   
CTCTGCTAGTGCCTCGCGAAT
Done.