Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01028.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4941
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.33


Found at i:3860 original size:13 final size:13

Alignment explanation


    Indices: 3844--3869  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

       3834 GTTTTGTGCT

                         
       3844 GATATTTTTCTTA
          1 GATATTTTTCTTA

                         
       3857 GATATTTTTCTTA
          1 GATATTTTTCTTA

       3870 TTTGAGTTGT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.23, C:0.08, G:0.08, T:0.62


Consensus pattern (13 bp):   
GATATTTTTCTTA
Done.