Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01028.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4374
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32


Found at i:3293 original size:13 final size:13

Alignment explanation


    Indices: 3277--3302  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

       3267 GTTTTGTGCT

                         
       3277 GATATTTTTCTTA
          1 GATATTTTTCTTA

                         
       3290 GATATTTTTCTTA
          1 GATATTTTTCTTA

       3303 TTTGAGTTGT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.23, C:0.08, G:0.08, T:0.62


Consensus pattern (13 bp):   
GATATTTTTCTTA
Done.