Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01039.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 942

Length: 1571
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28


Found at i:1422 original size:37 final size:37

Alignment explanation


    Indices: 1376--1451  Score: 143
    Period size: 37  Copynumber: 2.1  Consensus size: 37

       1366 CTTCAGAGAC

                                              *  
       1376 ATGAAATTAAGCATCCTTGTAGTTTTACTTTCAGTTT
          1 ATGAAATTAAGCATCCTTGTAGTTTTACTTTCAGATT

                                                 
       1413 ATGAAATTAAGCATCCTTGTAGTTTTACTTTCAGATT
          1 ATGAAATTAAGCATCCTTGTAGTTTTACTTTCAGATT

              
       1450 AT
          1 AT

       1452 AGTATGGGGC


Statistics
Matches: 38,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  37   38  1.00

ACGTcount: A:0.29, C:0.13, G:0.13, T:0.45


Consensus pattern (37 bp):   
ATGAAATTAAGCATCCTTGTAGTTTTACTTTCAGATT
Done.