Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01056.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3482
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33


Found at i:198 original size:24 final size:24

Alignment explanation


    Indices: 162--211  Score: 82
    Period size: 24  Copynumber: 2.1  Consensus size: 24

        152 AAGCTTAAGG

                    *               
        162 TCCCTAAGTATCAAAAATACATTT
          1 TCCCTAAGCATCAAAAATACATTT

                 *                  
        186 TCCCTGAGCATCAAAAATACATTT
          1 TCCCTAAGCATCAAAAATACATTT

              
        210 TC
          1 TC

        212 AGAAAACAAT


Statistics
Matches: 24,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  24   24  1.00

ACGTcount: A:0.38, C:0.24, G:0.06, T:0.32


Consensus pattern (24 bp):   
TCCCTAAGCATCAAAAATACATTT
Done.