Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01059.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 695

Length: 1159
ACGTcount: A:0.24, C:0.20, G:0.17, T:0.39


Found at i:686 original size:16 final size:16

Alignment explanation


    Indices: 655--695  Score: 50
    Period size: 16  Copynumber: 2.6  Consensus size: 16

        645 ATTCACACTT

                            
        655 TTGAT-TAATCATCAA
          1 TTGATATAATCATCAA

                             
        670 TTGATATAATACA-CAA
          1 TTGATATAAT-CATCAA

             *        
        686 TAGATATAAT
          1 TTGATATAAT

        696 GCTATATTTT


Statistics
Matches: 23,  Mismatches: 1, Indels: 3
        0.85            0.04        0.11

Matches are distributed among these distances:
  15    5  0.22
  16   16  0.70
  17    2  0.09

ACGTcount: A:0.46, C:0.10, G:0.07, T:0.37


Consensus pattern (16 bp):   
TTGATATAATCATCAA
Done.