Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01067.N3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 502

Length: 838
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.36


Found at i:113 original size:59 final size:59

Alignment explanation


    Indices: 9--142  Score: 223
    Period size: 59  Copynumber: 2.2  Consensus size: 59

          1 AATTTTTA

                     *                                                  
          9 AGCGAGATTTCCTCATCATTATCCCTTAAAATTATTTCCCCTTTTTTAGACGATATCTGT
          1 AGCGA-ATTCCCTCATCATTATCCCTTAAAATTATTTCCCCTTTTTTAGACGATATCTGT

                                                   *         *         
         69 AGCGAATTCCCTCATCATTATCCCTTAAAATTATTTCCCTTTTTTTAGATGATATCTGT
          1 AGCGAATTCCCTCATCATTATCCCTTAAAATTATTTCCCCTTTTTTAGACGATATCTGT

                           
        128 AGCGAATTCCACTCA
          1 AGCGAATTCC-CTCA

        143 ACTATATCTC


Statistics
Matches: 70,  Mismatches: 3, Indels: 2
        0.93            0.04        0.03

Matches are distributed among these distances:
  59   61  0.87
  60    9  0.13

ACGTcount: A:0.26, C:0.24, G:0.10, T:0.40


Consensus pattern (59 bp):   
AGCGAATTCCCTCATCATTATCCCTTAAAATTATTTCCCCTTTTTTAGACGATATCTGT

Done.