Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01075.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 580

Length: 967
ACGTcount: A:0.27, C:0.18, G:0.17, T:0.37


Found at i:881 original size:16 final size:18

Alignment explanation


    Indices: 862--900  Score: 50
    Period size: 16  Copynumber: 2.4  Consensus size: 18

        852 TAAAAGCTCG

                              
        862 AGAAATTAAA-AAA-AAA
          1 AGAAATTAAACAAAGAAA

                              
        878 AGAAA--AAACAAAGAAA
          1 AGAAATTAAACAAAGAAA

                   
        894 AGAAATT
          1 AGAAATT

        901 GATACCCATG


Statistics
Matches: 19,  Mismatches: 0, Indels: 6
        0.76            0.00        0.24

Matches are distributed among these distances:
  14    3  0.16
  15    3  0.16
  16   13  0.68

ACGTcount: A:0.77, C:0.03, G:0.10, T:0.10


Consensus pattern (18 bp):   
AGAAATTAAACAAAGAAA
Done.