Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01579.N3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 416

Length: 694
ACGTcount: A:0.36, C:0.12, G:0.22, T:0.30


Found at i:668 original size:17 final size:17

Alignment explanation


    Indices: 646--679  Score: 59
    Period size: 17  Copynumber: 2.0  Consensus size: 17

        636 AAAGATTGAT

                   *         
        646 GAGTTTTTAAGGATGAA
          1 GAGTTTTAAAGGATGAA

                             
        663 GAGTTTTAAAGGATGAA
          1 GAGTTTTAAAGGATGAA

        680 TAAATTTTTT


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   16  1.00

ACGTcount: A:0.38, C:0.00, G:0.29, T:0.32


Consensus pattern (17 bp):   
GAGTTTTAAAGGATGAA
Done.