Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01076.P104

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8135
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.34


Found at i:2836 original size:21 final size:21

Alignment explanation


    Indices: 2810--2852  Score: 86
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       2800 ATTCTTCTAA

                                 
       2810 AAGAAATACATACATATATAT
          1 AAGAAATACATACATATATAT

                                 
       2831 AAGAAATACATACATATATAT
          1 AAGAAATACATACATATATAT

             
       2852 A
          1 A

       2853 TATTGTTGAT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.58, C:0.09, G:0.05, T:0.28


Consensus pattern (21 bp):   
AAGAAATACATACATATATAT

Found at i:7802 original size:20 final size:20

Alignment explanation


    Indices: 7749--7804  Score: 67
    Period size: 20  Copynumber: 2.7  Consensus size: 20

       7739 ATCTGTATCT

                                  
       7749 ATTTTCAATATTCTTATCCTGA
          1 ATTTT-AATATT-TTATCCTGA

                  **       *    
       7771 ATTTTAGGATTTTATTCTGA
          1 ATTTTAATATTTTATCCTGA

                          
       7791 ATTTTAATATTTTA
          1 ATTTTAATATTTTA

       7805 ATTTGGATTT


Statistics
Matches: 29,  Mismatches: 5, Indels: 2
        0.81            0.14        0.06

Matches are distributed among these distances:
  20   20  0.69
  21    4  0.14
  22    5  0.17

ACGTcount: A:0.29, C:0.09, G:0.07, T:0.55


Consensus pattern (20 bp):   
ATTTTAATATTTTATCCTGA
Done.