Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01588.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2961
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28


Found at i:68 original size:22 final size:23

Alignment explanation


    Indices: 26--68  Score: 61
    Period size: 23  Copynumber: 1.9  Consensus size: 23

         16 ATTTACAAAA

                          * *      
         26 AAAAAAAAAAGAGAGAGAAAGTT
          1 AAAAAAAAAAGAGAAAAAAAGTT

                                 
         49 AAAAAAAAAAG-GAAAAAAAG
          1 AAAAAAAAAAGAGAAAAAAAG

         69 GGAAAGAAGA


Statistics
Matches: 18,  Mismatches: 2, Indels: 1
        0.86            0.10        0.05

Matches are distributed among these distances:
  22    7  0.39
  23   11  0.61

ACGTcount: A:0.77, C:0.00, G:0.19, T:0.05


Consensus pattern (23 bp):   
AAAAAAAAAAGAGAAAAAAAGTT

Found at i:2905 original size:6 final size:6

Alignment explanation


    Indices: 2896--2921  Score: 52
    Period size: 6  Copynumber: 4.3  Consensus size: 6

       2886 GCTCTGGCTT

                                          
       2896 TGGCAC TGGCAC TGGCAC TGGCAC TG
          1 TGGCAC TGGCAC TGGCAC TGGCAC TG

       2922 TAATCCTCAT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   20  1.00

ACGTcount: A:0.15, C:0.31, G:0.35, T:0.19


Consensus pattern (6 bp):   
TGGCAC

Done.