Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01080.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 844

Length: 1407
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33


Found at i:461 original size:33 final size:33

Alignment explanation


    Indices: 420--486  Score: 134
    Period size: 33  Copynumber: 2.0  Consensus size: 33

        410 ACTGTAAGTA

                                             
        420 AAAATCTAACCATATTGCTCATTCAAATGATTT
          1 AAAATCTAACCATATTGCTCATTCAAATGATTT

                                             
        453 AAAATCTAACCATATTGCTCATTCAAATGATTT
          1 AAAATCTAACCATATTGCTCATTCAAATGATTT

             
        486 A
          1 A

        487 TCCATTGTCT


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  33   34  1.00

ACGTcount: A:0.40, C:0.18, G:0.06, T:0.36


Consensus pattern (33 bp):   
AAAATCTAACCATATTGCTCATTCAAATGATTT
Done.