Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01087.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1947
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.27


Found at i:60 original size:3 final size:3

Alignment explanation


    Indices: 52--82  Score: 55
    Period size: 3  Copynumber: 10.7  Consensus size: 3

         42 TTCCATACCA

                                                      
         52 TCC TCC TCC TCC TCC -CC TCC TCC TCC TCC TC
          1 TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC TC

         83 TTCTTCGAAT


Statistics
Matches: 27,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
   2    2  0.07
   3   25  0.93

ACGTcount: A:0.00, C:0.68, G:0.00, T:0.32


Consensus pattern (3 bp):   
TCC

Found at i:72 original size:14 final size:14

Alignment explanation


    Indices: 53--80  Score: 56
    Period size: 14  Copynumber: 2.0  Consensus size: 14

         43 TCCATACCAT

                          
         53 CCTCCTCCTCCTCC
          1 CCTCCTCCTCCTCC

                          
         67 CCTCCTCCTCCTCC
          1 CCTCCTCCTCCTCC

         81 TCTTCTTCGA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   14  1.00

ACGTcount: A:0.00, C:0.71, G:0.00, T:0.29


Consensus pattern (14 bp):   
CCTCCTCCTCCTCC
Done.