Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01095.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4107
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29


Found at i:3521 original size:84 final size:84

Alignment explanation


    Indices: 3419--3588  Score: 340
    Period size: 84  Copynumber: 2.0  Consensus size: 84

       3409 GCTCAAGATC

                                                                             
       3419 TGATCAATTCGGTTAGTTTGACTAGTTTAATTGGTTTTTAAATAAATTTTTTTTCTAAAATAAAA
          1 TGATCAATTCGGTTAGTTTGACTAGTTTAATTGGTTTTTAAATAAATTTTTTTTCTAAAATAAAA

                               
       3484 TAGAATAAATAATAAATGA
         66 TAGAATAAATAATAAATGA

                                                                             
       3503 TGATCAATTCGGTTAGTTTGACTAGTTTAATTGGTTTTTAAATAAATTTTTTTTCTAAAATAAAA
          1 TGATCAATTCGGTTAGTTTGACTAGTTTAATTGGTTTTTAAATAAATTTTTTTTCTAAAATAAAA

                               
       3568 TAGAATAAATAATAAATGA
         66 TAGAATAAATAATAAATGA

              
       3587 TG
          1 TG

       3589 TTATAACTTG


Statistics
Matches: 86,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  84   86  1.00

ACGTcount: A:0.40, C:0.05, G:0.12, T:0.43


Consensus pattern (84 bp):   
TGATCAATTCGGTTAGTTTGACTAGTTTAATTGGTTTTTAAATAAATTTTTTTTCTAAAATAAAA
TAGAATAAATAATAAATGA
Done.