Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01125.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 922

Length: 1537
ACGTcount: A:0.24, C:0.16, G:0.19, T:0.41


Found at i:1341 original size:22 final size:22

Alignment explanation


    Indices: 1316--1360  Score: 54
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       1306 CACAAACTTT

                                  
       1316 TTACTAGCAATTTAACTACAAA
          1 TTACTAGCAATTTAACTACAAA

                 *   *    *  *    
       1338 TTACTGGCAGTTTATCTGCAAA
          1 TTACTAGCAATTTAACTACAAA

             
       1360 T
          1 T

       1361 ATTTAATGTT


Statistics
Matches: 19,  Mismatches: 4, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  22   19  1.00

ACGTcount: A:0.36, C:0.18, G:0.11, T:0.36


Consensus pattern (22 bp):   
TTACTAGCAATTTAACTACAAA
Done.