Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01126.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3138
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.34


Found at i:2551 original size:16 final size:16

Alignment explanation


    Indices: 2530--2562  Score: 57
    Period size: 16  Copynumber: 2.1  Consensus size: 16

       2520 GCACAGTAAG

                   *        
       2530 CAAAGTGCGAGCCTGT
          1 CAAAGTGAGAGCCTGT

                            
       2546 CAAAGTGAGAGCCTGT
          1 CAAAGTGAGAGCCTGT

             
       2562 C
          1 C

       2563 GAATTGCAAG


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.27, C:0.24, G:0.30, T:0.18


Consensus pattern (16 bp):   
CAAAGTGAGAGCCTGT
Done.