Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01127.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3673
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.33


Found at i:1901 original size:28 final size:28

Alignment explanation


    Indices: 1831--1911  Score: 83
    Period size: 28  Copynumber: 2.9  Consensus size: 28

       1821 TTGTTCTATT

                *   *     *      *      
       1831 TAAGAACTCTGGTGCTTTTCTATTCTGA
          1 TAAGCACTATGGTGTTTTTCTGTTCTGA

                     **                 
       1859 TAAGCACTACAGTGTTTTTCTGTTCTGA
          1 TAAGCACTATGGTGTTTTTCTGTTCTGA

                             *        
       1887 TAAGCAC-ATTGGTGTTGTTCTGTTC
          1 TAAGCACTA-TGGTGTTTTTCTGTTC

       1912 CGTTAACACA


Statistics
Matches: 43,  Mismatches: 9, Indels: 2
        0.80            0.17        0.04

Matches are distributed among these distances:
  27    1  0.02
  28   42  0.98

ACGTcount: A:0.20, C:0.17, G:0.20, T:0.43


Consensus pattern (28 bp):   
TAAGCACTATGGTGTTTTTCTGTTCTGA

Found at i:1928 original size:28 final size:28

Alignment explanation


    Indices: 1848--1928  Score: 67
    Period size: 28  Copynumber: 2.9  Consensus size: 28

       1838 TCTGGTGCTT

                *   *             *     *
       1848 TTCTATTCTGATAAGCAC-TACAGTGTTT
          1 TTCTGTTCCGATAAGCACAT-CGGTGTTG

                    *           *       
       1876 TTCTGTTCTGATAAGCACATTGGTGTTG
          1 TTCTGTTCCGATAAGCACATCGGTGTTG

                      *               
       1904 TTCTGTTCCGTTAA-CACACTCGGTG
          1 TTCTGTTCCGATAAGCACA-TCGGTG

       1929 CCCTTTGTAT


Statistics
Matches: 44,  Mismatches: 7, Indels: 4
        0.80            0.13        0.07

Matches are distributed among these distances:
  27    4  0.09
  28   39  0.89
  29    1  0.02

ACGTcount: A:0.20, C:0.20, G:0.20, T:0.41


Consensus pattern (28 bp):   
TTCTGTTCCGATAAGCACATCGGTGTTG
Done.