Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01159.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2283
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30


Found at i:2013 original size:18 final size:18

Alignment explanation


    Indices: 1990--2042  Score: 88
    Period size: 18  Copynumber: 2.9  Consensus size: 18

       1980 GATAAATCCT

                              
       1990 AATCAAGGATTTACTCCC
          1 AATCAAGGATTTACTCCC

                       *      
       2008 AATCAAGGATTGACTCCC
          1 AATCAAGGATTTACTCCC

                 *           
       2026 AATCAGGGATTTACTCC
          1 AATCAAGGATTTACTCC

       2043 TATATTAACA


Statistics
Matches: 32,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  18   32  1.00

ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26


Consensus pattern (18 bp):   
AATCAAGGATTTACTCCC
Done.