Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00187.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2135
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35


Found at i:780 original size:9 final size:9

Alignment explanation


    Indices: 766--791  Score: 52
    Period size: 9  Copynumber: 2.9  Consensus size: 9

        756 CAAGTTAAAA

                     
        766 AAAAAAACC
          1 AAAAAAACC

                     
        775 AAAAAAACC
          1 AAAAAAACC

                    
        784 AAAAAAAC
          1 AAAAAAAC

        792 AACACCACCA


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   17  1.00

ACGTcount: A:0.81, C:0.19, G:0.00, T:0.00


Consensus pattern (9 bp):   
AAAAAAACC
Done.