Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01607.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2942
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.33


Found at i:1595 original size:130 final size:130

Alignment explanation


    Indices: 1362--1621  Score: 520
    Period size: 130  Copynumber: 2.0  Consensus size: 130

       1352 AAAATAAGTA

                                                                             
       1362 ATGCTGTGGCTTCAGCTAATCCATTTCAGTTGAAATTTGTAATGCTTTGTTCTTTGGTGTAGGAA
          1 ATGCTGTGGCTTCAGCTAATCCATTTCAGTTGAAATTTGTAATGCTTTGTTCTTTGGTGTAGGAA

                                                                             
       1427 CACCTGAATTCATGGCTCCAGAGCTTTATGATGAGGAGTATAATGAGCTTGTCGACATTTATTCT
         66 CACCTGAATTCATGGCTCCAGAGCTTTATGATGAGGAGTATAATGAGCTTGTCGACATTTATTCT

                                                                             
       1492 ATGCTGTGGCTTCAGCTAATCCATTTCAGTTGAAATTTGTAATGCTTTGTTCTTTGGTGTAGGAA
          1 ATGCTGTGGCTTCAGCTAATCCATTTCAGTTGAAATTTGTAATGCTTTGTTCTTTGGTGTAGGAA

                                                                             
       1557 CACCTGAATTCATGGCTCCAGAGCTTTATGATGAGGAGTATAATGAGCTTGTCGACATTTATTCT
         66 CACCTGAATTCATGGCTCCAGAGCTTTATGATGAGGAGTATAATGAGCTTGTCGACATTTATTCT

       1622 TTTGGTATGT


Statistics
Matches: 130,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 130  130  1.00

ACGTcount: A:0.24, C:0.16, G:0.22, T:0.38


Consensus pattern (130 bp):   
ATGCTGTGGCTTCAGCTAATCCATTTCAGTTGAAATTTGTAATGCTTTGTTCTTTGGTGTAGGAA
CACCTGAATTCATGGCTCCAGAGCTTTATGATGAGGAGTATAATGAGCTTGTCGACATTTATTCT
Done.