Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01187.P2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1706
ACGTcount: A:0.25, C:0.17, G:0.16, T:0.42


Found at i:665 original size:20 final size:20

Alignment explanation


    Indices: 621--703  Score: 125
    Period size: 20  Copynumber: 4.2  Consensus size: 20

        611 AATTTTGGAG

                  *             
        621 TTTTTATAAA-TATTTTGAA
          1 TTTTTAAAAATTATTTTGAA

                             *  
        640 -TTTTAAAAATTATTTTAAA
          1 TTTTTAAAAATTATTTTGAA

                   *            
        659 TTTTTAAGAATTATTTTGAA
          1 TTTTTAAAAATTATTTTGAA

                                
        679 TTTTTAAAAATTATTTTGAA
          1 TTTTTAAAAATTATTTTGAA

                 
        699 TTTTT
          1 TTTTT

        704 TTTTTATAAT


Statistics
Matches: 57,  Mismatches: 5, Indels: 3
        0.88            0.08        0.05

Matches are distributed among these distances:
  18    8  0.14
  19    8  0.14
  20   41  0.72

ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58


Consensus pattern (20 bp):   
TTTTTAAAAATTATTTTGAA
Done.