Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01189.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2701
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.35


Found at i:1750 original size:94 final size:93

Alignment explanation


    Indices: 1623--1809  Score: 322
    Period size: 94  Copynumber: 2.0  Consensus size: 93

       1613 AGCAATCCTT

                                  *                                          
       1623 TTCTTAGCCTTTATTTACTTTTGTTAGGATTGAACTCTGATTAGAGATTTTGTTTTGGGTTTAAT
          1 TTCTTAGCCTTTATTTACTTTTATTAGGATTGAACTCTGATTAGAGATTTTGTTTTGGGTTTAAT

                                          
       1688 TGTTGATTCATCTTTTTTTTCTATTATTTC
         66 TGTTGATTCATC--TTTTTTCTATTATTTC

                 *                                                           
       1718 TTCTTCGCCTTTATTTAC-TTTATTAGGATTGAACTCTGATTAGAGATTTTGTTTTGGGTTTAAT
          1 TTCTTAGCCTTTATTTACTTTTATTAGGATTGAACTCTGATTAGAGATTTTGTTTTGGGTTTAAT

                *                       
       1782 TGTTTATTCATCTTTTTTCTATTATTTC
         66 TGTTGATTCATCTTTTTTCTATTATTTC

       1810 CTGGCAACTC


Statistics
Matches: 89,  Mismatches: 3, Indels: 3
        0.94            0.03        0.03

Matches are distributed among these distances:
  92   16  0.18
  94   56  0.63
  95   17  0.19

ACGTcount: A:0.18, C:0.11, G:0.14, T:0.57


Consensus pattern (93 bp):   
TTCTTAGCCTTTATTTACTTTTATTAGGATTGAACTCTGATTAGAGATTTTGTTTTGGGTTTAAT
TGTTGATTCATCTTTTTTCTATTATTTC

Done.