Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01194.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4402
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34


Found at i:1427 original size:20 final size:20

Alignment explanation


    Indices: 1402--1442  Score: 82
    Period size: 20  Copynumber: 2.0  Consensus size: 20

       1392 TGAGAACCAT

                                
       1402 GAAAGCAGGAGCTTTATATG
          1 GAAAGCAGGAGCTTTATATG

                                
       1422 GAAAGCAGGAGCTTTATATG
          1 GAAAGCAGGAGCTTTATATG

             
       1442 G
          1 G

       1443 TTATCTTTTC


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   21  1.00

ACGTcount: A:0.34, C:0.10, G:0.32, T:0.24


Consensus pattern (20 bp):   
GAAAGCAGGAGCTTTATATG
Done.