Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01609.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 838

Length: 1397
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35


Found at i:1169 original size:40 final size:40

Alignment explanation


    Indices: 1124--1204  Score: 153
    Period size: 40  Copynumber: 2.0  Consensus size: 40

       1114 CAGAAAACCT

                                                    
       1124 TGGTGTTGAGTTTTTCAAAGGTACTGTTGTGGTATAATAA
          1 TGGTGTTGAGTTTTTCAAAGGTACTGTTGTGGTATAATAA

                              *                     
       1164 TGGTGTTGAGTTTTTCAATGGTACTGTTGTGGTATAATAA
          1 TGGTGTTGAGTTTTTCAAAGGTACTGTTGTGGTATAATAA

             
       1204 T
          1 T

       1205 CTTCCCATTA


Statistics
Matches: 40,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  40   40  1.00

ACGTcount: A:0.23, C:0.05, G:0.27, T:0.44


Consensus pattern (40 bp):   
TGGTGTTGAGTTTTTCAAAGGTACTGTTGTGGTATAATAA
Done.