Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01217.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4083
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34


Found at i:3868 original size:15 final size:15

Alignment explanation


    Indices: 3848--3878  Score: 62
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       3838 ACCCCTTCCG

                           
       3848 AGAGCATTTTGTGAT
          1 AGAGCATTTTGTGAT

                           
       3863 AGAGCATTTTGTGAT
          1 AGAGCATTTTGTGAT

             
       3878 A
          1 A

       3879 CTTTATCAAC


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.29, C:0.06, G:0.26, T:0.39


Consensus pattern (15 bp):   
AGAGCATTTTGTGAT
Done.