Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01225.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 708

Length: 1181
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30


Found at i:180 original size:3 final size:3

Alignment explanation


    Indices: 168--205  Score: 69
    Period size: 3  Copynumber: 13.0  Consensus size: 3

        158 TTGTTGTTGC

                                                               
        168 TGG TGG -GG TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG
          1 TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG

        206 GGATGAGGAA


Statistics
Matches: 34,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
   2    2  0.06
   3   32  0.94

ACGTcount: A:0.00, C:0.00, G:0.68, T:0.32


Consensus pattern (3 bp):   
TGG

Done.