Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01616.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 515

Length: 859
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29


Found at i:257 original size:12 final size:13

Alignment explanation


    Indices: 240--276  Score: 51
    Period size: 12  Copynumber: 3.0  Consensus size: 13

        230 CAAAAGACCA

                         
        240 TCATCATCTTC-T
          1 TCATCATCTTCAT

                  *      
        252 TCATCACCTTCAT
          1 TCATCATCTTCAT

                         
        265 T-ATCATCTTCAT
          1 TCATCATCTTCAT

        277 CAAAAAACCC


Statistics
Matches: 22,  Mismatches: 2, Indels: 2
        0.85            0.08        0.08

Matches are distributed among these distances:
  12   20  0.91
  13    2  0.09

ACGTcount: A:0.22, C:0.32, G:0.00, T:0.46


Consensus pattern (13 bp):   
TCATCATCTTCAT
Done.