Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01253.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 484

Length: 807
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.35


Found at i:635 original size:18 final size:17

Alignment explanation


    Indices: 589--632  Score: 79
    Period size: 17  Copynumber: 2.6  Consensus size: 17

        579 GTGCTTGCAG

                *            
        589 AGGCGTGGGGTGGCAAA
          1 AGGCATGGGGTGGCAAA

                             
        606 AGGCATGGGGTGGCAAA
          1 AGGCATGGGGTGGCAAA

                      
        623 AGGCATGGGG
          1 AGGCATGGGG

        633 GTGACCAGGG


Statistics
Matches: 26,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  17   26  1.00

ACGTcount: A:0.25, C:0.11, G:0.52, T:0.11


Consensus pattern (17 bp):   
AGGCATGGGGTGGCAAA
Done.