Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01260.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2658
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33


Found at i:1856 original size:21 final size:22

Alignment explanation


    Indices: 1832--1872  Score: 57
    Period size: 22  Copynumber: 1.9  Consensus size: 22

       1822 TTGGTTTAAG

                         *        
       1832 TAGTTAAAG-TATGTATTTAGT
          1 TAGTTAAAGCTATCTATTTAGT

                 *              
       1853 TAGTTCAAGCTATCTATTTA
          1 TAGTTAAAGCTATCTATTTA

       1873 CTGATATTGG


Statistics
Matches: 17,  Mismatches: 2, Indels: 1
        0.85            0.10        0.05

Matches are distributed among these distances:
  21    8  0.47
  22    9  0.53

ACGTcount: A:0.32, C:0.07, G:0.15, T:0.46


Consensus pattern (22 bp):   
TAGTTAAAGCTATCTATTTAGT

Done.