Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01264.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4315
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33


Found at i:307 original size:2 final size:2

Alignment explanation


    Indices: 300--325  Score: 52
    Period size: 2  Copynumber: 13.0  Consensus size: 2

        290 CCAGACCAGA

                                                  
        300 AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT

        326 GTCAGAAACA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   24  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Found at i:2637 original size:29 final size:29

Alignment explanation


    Indices: 2600--2655  Score: 94
    Period size: 29  Copynumber: 1.9  Consensus size: 29

       2590 AAGCTTCTTC

                                         
       2600 AAAGAATGAAATATTCACAAAAAGGTGTA
          1 AAAGAATGAAATATTCACAAAAAGGTGTA

                *            *         
       2629 AAAGCATGAAATATTCATAAAAAGGTG
          1 AAAGAATGAAATATTCACAAAAAGGTG

       2656 CAGTAGTGAG


Statistics
Matches: 25,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  29   25  1.00

ACGTcount: A:0.54, C:0.07, G:0.18, T:0.21


Consensus pattern (29 bp):   
AAAGAATGAAATATTCACAAAAAGGTGTA
Done.