Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01264.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4371
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.33


Found at i:307 original size:2 final size:2

Alignment explanation


    Indices: 300--325  Score: 52
    Period size: 2  Copynumber: 13.0  Consensus size: 2

        290 CCAGACCAGA

                                                  
        300 AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT

        326 GTCAGAAACA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   24  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Found at i:2176 original size:28 final size:28

Alignment explanation


    Indices: 2144--2198  Score: 110
    Period size: 28  Copynumber: 2.0  Consensus size: 28

       2134 GCAGAGTTTC

                                        
       2144 CCTCTTCATTGTTTTACAATATTTTATG
          1 CCTCTTCATTGTTTTACAATATTTTATG

                                       
       2172 CCTCTTCATTGTTTTACAATATTTTAT
          1 CCTCTTCATTGTTTTACAATATTTTAT

       2199 ATATTTGGTT


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  28   27  1.00

ACGTcount: A:0.22, C:0.18, G:0.05, T:0.55


Consensus pattern (28 bp):   
CCTCTTCATTGTTTTACAATATTTTATG
Done.