Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01265.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3125
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31


Found at i:2098 original size:21 final size:21

Alignment explanation


    Indices: 2074--2114  Score: 64
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       2064 TCAAAACGAC

                     *           
       2074 ATAGTTTAGCCTTTTAACTTA
          1 ATAGTTTAGACTTTTAACTTA

                   *            
       2095 ATAGTTTTGACTTTTAACTT
          1 ATAGTTTAGACTTTTAACTT

       2115 TAAAAAATGT


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.27, C:0.12, G:0.10, T:0.51


Consensus pattern (21 bp):   
ATAGTTTAGACTTTTAACTTA
Done.