Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01268.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3926
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.38


Found at i:2117 original size:34 final size:34

Alignment explanation


    Indices: 2074--2139  Score: 105
    Period size: 34  Copynumber: 1.9  Consensus size: 34

       2064 TGGTAGGATG

                       * *          *         
       2074 TCTATTATTGTTAGTGGAGTTATTTCTTGGCATT
          1 TCTATTATTGTCAATGGAGTTATTGCTTGGCATT

                                            
       2108 TCTATTATTGTCAATGGAGTTATTGCTTGGCA
          1 TCTATTATTGTCAATGGAGTTATTGCTTGGCA

       2140 GTAAATGATG


Statistics
Matches: 29,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  34   29  1.00

ACGTcount: A:0.20, C:0.11, G:0.21, T:0.48


Consensus pattern (34 bp):   
TCTATTATTGTCAATGGAGTTATTGCTTGGCATT
Done.