Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01270.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2287
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33


Found at i:60 original size:3 final size:3

Alignment explanation


    Indices: 52--82  Score: 53
    Period size: 3  Copynumber: 10.3  Consensus size: 3

         42 CGTTACCTGC

                                          *          
         52 TCT TCT TCT TCT TCT TCT TCT TCC TCT TCT T
          1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T

         83 TTATTTAATT


Statistics
Matches: 26,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   3   26  1.00

ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65


Consensus pattern (3 bp):   
TCT

Done.