Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01275.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1876
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.36


Found at i:1837 original size:13 final size:13

Alignment explanation


    Indices: 1819--1843  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

       1809 CATCTAGGAA

                         
       1819 TTGTAAATAACAT
          1 TTGTAAATAACAT

                        
       1832 TTGTAAATAACA
          1 TTGTAAATAACA

       1844 ATTACAAATA


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.48, C:0.08, G:0.08, T:0.36


Consensus pattern (13 bp):   
TTGTAAATAACAT
Done.