Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01275.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 531

Length: 886
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31


Found at i:847 original size:13 final size:13

Alignment explanation


    Indices: 829--853  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

        819 CATCTAGGAA

                         
        829 TTGTAAATAACAT
          1 TTGTAAATAACAT

                        
        842 TTGTAAATAACA
          1 TTGTAAATAACA

        854 ATTACAAATA


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.48, C:0.08, G:0.08, T:0.36


Consensus pattern (13 bp):   
TTGTAAATAACAT
Done.