Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01286.F8

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2726
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30


Found at i:908 original size:50 final size:50

Alignment explanation


    Indices: 833--932  Score: 182
    Period size: 50  Copynumber: 2.0  Consensus size: 50

        823 TTGTTGTAAG

                  *       *                                   
        833 TTCTTTTAAGAAAGTCTTCTTCTCTTCTTACTTGGGTAAAACTTTCTTGC
          1 TTCTTTCAAGAAAGCCTTCTTCTCTTCTTACTTGGGTAAAACTTTCTTGC

                                                              
        883 TTCTTTCAAGAAAGCCTTCTTCTCTTCTTACTTGGGTAAAACTTTCTTGC
          1 TTCTTTCAAGAAAGCCTTCTTCTCTTCTTACTTGGGTAAAACTTTCTTGC

        933 ATAAATCTGA


Statistics
Matches: 48,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  50   48  1.00

ACGTcount: A:0.20, C:0.22, G:0.12, T:0.46


Consensus pattern (50 bp):   
TTCTTTCAAGAAAGCCTTCTTCTCTTCTTACTTGGGTAAAACTTTCTTGC
Done.