Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01290.P4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4496
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35


Found at i:440 original size:34 final size:34

Alignment explanation


    Indices: 402--469  Score: 136
    Period size: 34  Copynumber: 2.0  Consensus size: 34

        392 TTAGTTGATT

                                              
        402 TCTCCTTTATGAATGTAAAAAGTCTTTGAAACTA
          1 TCTCCTTTATGAATGTAAAAAGTCTTTGAAACTA

                                              
        436 TCTCCTTTATGAATGTAAAAAGTCTTTGAAACTA
          1 TCTCCTTTATGAATGTAAAAAGTCTTTGAAACTA

        470 ACTTCCTCCT


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  34   34  1.00

ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38


Consensus pattern (34 bp):   
TCTCCTTTATGAATGTAAAAAGTCTTTGAAACTA
Done.