Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01307.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1962
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.28


Found at i:1438 original size:21 final size:21

Alignment explanation


    Indices: 1414--1454  Score: 64
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1404 CAGTGAGGAT

                    *     *      
       1414 GATGATGATAATGATGACGAC
          1 GATGATGACAATGACGACGAC

                                
       1435 GATGATGACAATGACGACGA
          1 GATGATGACAATGACGACGA

       1455 TTATGCTGTT


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.39, C:0.12, G:0.29, T:0.20


Consensus pattern (21 bp):   
GATGATGACAATGACGACGAC

Found at i:1440 original size:18 final size:18

Alignment explanation


    Indices: 1417--1455  Score: 51
    Period size: 18  Copynumber: 2.2  Consensus size: 18

       1407 TGAGGATGAT

                    **        
       1417 GATGATAATGATGACGAC
          1 GATGATAACAATGACGAC

                  *           
       1435 GATGATGACAATGACGAC
          1 GATGATAACAATGACGAC

               
       1453 GAT
          1 GAT

       1456 TATGCTGTTT


Statistics
Matches: 18,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.38, C:0.13, G:0.28, T:0.21


Consensus pattern (18 bp):   
GATGATAACAATGACGAC
Done.