Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01315.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1734
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26


Found at i:1061 original size:45 final size:45

Alignment explanation


    Indices: 1022--1116  Score: 181
    Period size: 45  Copynumber: 2.1  Consensus size: 45

       1012 AGAAGATGAT

                       *                                 
       1022 GAAGAATATCCTTTGATGGAATCATTACATCCAGCAGAAGAAAAC
          1 GAAGAATATCCATTGATGGAATCATTACATCCAGCAGAAGAAAAC

                                                         
       1067 GAAGAATATCCATTGATGGAATCATTACATCCAGCAGAAGAAAAC
          1 GAAGAATATCCATTGATGGAATCATTACATCCAGCAGAAGAAAAC

                 
       1112 GAAGA
          1 GAAGA

       1117 TGAAGAAGAA


Statistics
Matches: 49,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  45   49  1.00

ACGTcount: A:0.44, C:0.17, G:0.19, T:0.20


Consensus pattern (45 bp):   
GAAGAATATCCATTGATGGAATCATTACATCCAGCAGAAGAAAAC

Found at i:1179 original size:3 final size:3

Alignment explanation


    Indices: 1171--1211  Score: 55
    Period size: 3  Copynumber: 13.7  Consensus size: 3

       1161 ATAACCGAAT

                            *   *   *                             
       1171 TGA TGA TGA TGA AGA AGA AGA TGA TGA TGA TGA TGA TGA TG
          1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TG

       1212 GAGAGTATTC


Statistics
Matches: 36,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   3   36  1.00

ACGTcount: A:0.39, C:0.00, G:0.34, T:0.27


Consensus pattern (3 bp):   
TGA

Done.