Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01624.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4691
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.28


Found at i:4607 original size:25 final size:25

Alignment explanation


    Indices: 4573--4623  Score: 84
    Period size: 25  Copynumber: 2.0  Consensus size: 25

       4563 TTCCTTATAA

                             **      
       4573 ACTTTAAATTAGGAATTCTATTAGG
          1 ACTTTAAATTAGGAATTAGATTAGG

                                     
       4598 ACTTTAAATTAGGAATTAGATTAGG
          1 ACTTTAAATTAGGAATTAGATTAGG

             
       4623 A
          1 A

       4624 TTTTCCTTTG


Statistics
Matches: 24,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  25   24  1.00

ACGTcount: A:0.39, C:0.06, G:0.18, T:0.37


Consensus pattern (25 bp):   
ACTTTAAATTAGGAATTAGATTAGG

Found at i:4622 original size:12 final size:12

Alignment explanation


    Indices: 4576--4623  Score: 51
    Period size: 12  Copynumber: 3.9  Consensus size: 12

       4566 CTTATAAACT

                        
       4576 TTAAATTAGGAA
          1 TTAAATTAGGAA

              **        *
       4588 TTCTATTAGGACT
          1 TTAAATTAGGA-A

                        
       4601 TTAAATTAGGAA
          1 TTAAATTAGGAA

               *       
       4613 TTAGATTAGGA
          1 TTAAATTAGGA

       4624 TTTTCCTTTG


Statistics
Matches: 28,  Mismatches: 7, Indels: 2
        0.76            0.19        0.05

Matches are distributed among these distances:
  12   19  0.68
  13    9  0.32

ACGTcount: A:0.40, C:0.04, G:0.19, T:0.38


Consensus pattern (12 bp):   
TTAAATTAGGAA
Done.