Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01319.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3916
ACGTcount: A:0.25, C:0.15, G:0.17, T:0.42


Found at i:77 original size:22 final size:22

Alignment explanation


    Indices: 34--78  Score: 56
    Period size: 22  Copynumber: 2.0  Consensus size: 22

         24 TTTTTTTATC

                             *    
         34 TTTTCCTTCTTTATCTTTTTTT
          1 TTTTCCTTCTTTATCTTCTTTT

                         *         
         56 TTTTCC-TCATTTCTCTTCTTTT
          1 TTTTCCTTC-TTTATCTTCTTTT

             
         78 T
          1 T

         79 GCCATCCCTC


Statistics
Matches: 20,  Mismatches: 2, Indels: 2
        0.83            0.08        0.08

Matches are distributed among these distances:
  21    2  0.10
  22   18  0.90

ACGTcount: A:0.04, C:0.22, G:0.00, T:0.73


Consensus pattern (22 bp):   
TTTTCCTTCTTTATCTTCTTTT
Done.