Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01324.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2459
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.31


Found at i:82 original size:5 final size:5

Alignment explanation


    Indices: 72--105  Score: 68
    Period size: 5  Copynumber: 6.8  Consensus size: 5

         62 ATCTCTCTCC

                                                    
         72 CCTCA CCTCA CCTCA CCTCA CCTCA CCTCA CCTC
          1 CCTCA CCTCA CCTCA CCTCA CCTCA CCTCA CCTC

        106 CATCTATCCC


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   29  1.00

ACGTcount: A:0.18, C:0.62, G:0.00, T:0.21


Consensus pattern (5 bp):   
CCTCA

Done.