Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01326.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6028
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.34


Found at i:4642 original size:10 final size:10

Alignment explanation


    Indices: 4627--4668  Score: 57
    Period size: 10  Copynumber: 4.1  Consensus size: 10

       4617 TAATTTTAGG

                      
       4627 ATTTATTTTT
          1 ATTTATTTTT

                  *   
       4637 ATTTATATTT
          1 ATTTATTTTT

             *        
       4647 AATTATTTTT
          1 ATTTATTTTT

                       
       4657 ATTTATCTTTT
          1 ATTTAT-TTTT

             
       4668 A
          1 A

       4669 GAATTTAATT


Statistics
Matches: 27,  Mismatches: 4, Indels: 1
        0.84            0.12        0.03

Matches are distributed among these distances:
  10   22  0.81
  11    5  0.19

ACGTcount: A:0.26, C:0.02, G:0.00, T:0.71


Consensus pattern (10 bp):   
ATTTATTTTT

Found at i:4674 original size:20 final size:20

Alignment explanation


    Indices: 4631--4674  Score: 52
    Period size: 20  Copynumber: 2.2  Consensus size: 20

       4621 TTTAGGATTT

                              **
       4631 ATTTTTATTTATATTTAATT
          1 ATTTTTATTTATATTTAAGA

                        *   *   
       4651 ATTTTTATTTATCTTTTAGA
          1 ATTTTTATTTATATTTAAGA

                
       4671 ATTT
          1 ATTT

       4675 AATTAGGAAT


Statistics
Matches: 20,  Mismatches: 4, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  20   20  1.00

ACGTcount: A:0.27, C:0.02, G:0.02, T:0.68


Consensus pattern (20 bp):   
ATTTTTATTTATATTTAAGA
Done.