Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01334.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 862

Length: 1437
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.34


Found at i:93 original size:6 final size:6

Alignment explanation


    Indices: 82--119  Score: 51
    Period size: 6  Copynumber: 6.5  Consensus size: 6

         72 TTGAAACGCT

                                    *      *             
         82 TTCTCC TTCTCC TTCTCC TTCCCC TTCCCC TTC-CC TTC
          1 TTCTCC TTCTCC TTCTCC TTCTCC TTCTCC TTCTCC TTC

        120 ATTGCGTCCC


Statistics
Matches: 31,  Mismatches: 1, Indels: 1
        0.94            0.03        0.03

Matches are distributed among these distances:
   5    5  0.16
   6   26  0.84

ACGTcount: A:0.00, C:0.55, G:0.00, T:0.45


Consensus pattern (6 bp):   
TTCTCC

Done.