Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01334.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 678

Length: 1131
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.33


Found at i:93 original size:6 final size:6

Alignment explanation


    Indices: 82--119  Score: 51
    Period size: 6  Copynumber: 6.5  Consensus size: 6

         72 TTGAAACGCT

                                    *      *             
         82 TTCTCC TTCTCC TTCTCC TTCCCC TTCCCC TTC-CC TTC
          1 TTCTCC TTCTCC TTCTCC TTCTCC TTCTCC TTCTCC TTC

        120 ATTGCGTCCC


Statistics
Matches: 31,  Mismatches: 1, Indels: 1
        0.94            0.03        0.03

Matches are distributed among these distances:
   5    5  0.16
   6   26  0.84

ACGTcount: A:0.00, C:0.55, G:0.00, T:0.45


Consensus pattern (6 bp):   
TTCTCC

Found at i:866 original size:15 final size:16

Alignment explanation


    Indices: 846--875  Score: 53
    Period size: 15  Copynumber: 1.9  Consensus size: 16

        836 AGCTGGGGCG

                            
        846 AATCTTC-AGAGTGCA
          1 AATCTTCAAGAGTGCA

                           
        861 AATCTTCAAGAGTGC
          1 AATCTTCAAGAGTGC

        876 TGATCTTACT


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15    7  0.50
  16    7  0.50

ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27


Consensus pattern (16 bp):   
AATCTTCAAGAGTGCA

Done.